Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRC rs11493798 chr11:116807171 C/A 6.93E-6 527 42.27 31 4.57 KM Plot
KIRC rs11500298 chr11:34924316 T/C 9.33E-13 525 40.58 32.23 3.48 KM Plot
KIRC rs115254762 chr8:757939 G/C 0 524 38.93 49.63 2.13 KM Plot
KIRC rs11584191 chr1:152500428 A/T 1.6E-5 527 37.83 44.3 35.6 KM Plot
KIRC rs11588447 chr1:188455599 G/A 4.91E-5 522 41.27 38.48 11.9 KM Plot
KIRC rs11610197 chr12:29512940 C/T 5.92E-8 524 40.57 39.47 6.07 KM Plot
KIRC rs11611420 chr12:29539524 G/T 3.58E-8 519 40.28 39.47 6.07 KM Plot
KIRC rs11613628 chr12:29479961 T/C 6.86E-8 521 40.58 39.47 6.07 KM Plot
KIRC rs116201501 chr6:25999149 C/T 7.65E-9 519 41 37.03 3.37 KM Plot
KIRC rs11642262 chr16:85362809 T/C 4.53E-7 508 6 37.37 43.3 KM Plot
KIRC rs11649872 chr17:72634434 T/C 7.42E-5 519 37.77 42.75 35.75 KM Plot
KIRC rs116633004 chr2:2618614 T/C 4.06E-5 521 38.98 44.57 8.35 KM Plot
KIRC rs11665872 chr19:56161898 C/T 2.37E-6 519 41.27 37.53 7.4 KM Plot
KIRC rs11666362 chr19:56157358 C/A 2.39E-6 517 42.75 37.45 7.4 KM Plot
KIRC rs11671023 chr19:56154545 A/C 6.03E-7 510 43.17 37.6 13.27 KM Plot